Notes for investigating ncRNA in polio. Smaller than drosophila, only 1 known (CRE).
Pedersen et al.: A comparative method for finding and folding RNA secondary structures within protein-coding regions. Nucleic Acids Res. 2004;32:4925-36.
Murray & Barton: Poliovirus CRE-dependent VPg uridylylation is required for positive-strand RNA synthesis but not for negative-strand RNA synthesis. J. Virol. 2003;77:4739-50.
Han et al.: A phylogenetically conserved RNA structure in the poliovirus open reading frame inhibits the antiviral endoribonuclease RNase L. J. Virol. 2007;81:5561-72.
Pijlman et al.: A highly structured, nuclease-resistant, noncoding RNA produced by flaviviruses is required for pathogenicity. Cell Host Microbe 2008;4:579-91.
- Other viral families, similar analysis
- Palmenberg et al.: Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution. Science 2009;324:55-9.
-- Oscar Westesson - 02 Feb 2009