Bio Wiki

Welcome to biowiki.org. This site hosts wikis for various computational biology projects.

Right now you're in the Main web, used mostly as an online lab notebook by the Holmes lab at UC Berkeley. Anyone can edit almost any page, so please feel free to contribute content.

You may have come here for

• the DART package, a suite of tools for probabilistic sequence analysis, molecular evolution, multiple alignment and phylogenomics;
  • programs include xrate, stemloc, Handel, phylocomposer, phylodirector, evoldoer and more;

• the AJAX interface to GBrowse;

• one of our computational biology classes.

Other webs hosted here include

• the GBrowse web, for development of the AJAX GBrowse client;
• the Blog web, for sporadic postings of compbio links and literature refs;
• the TWiki web for documentation on how this site works;
• the Sandbox web (go play).